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Biologics & Sequence MCP Server

7 toolsv1.0.0
Overview

About

Intelligent platform for biological sequences and macromolecules, covering antibody-antigen interaction discovery, full-lifecycle sequence search, sequence fetching and alignment, and modification status analysis.

Capabilities

sequence_search_submit

Use this tool when the user wants to launch a bio sequence search job. Tool flow: 1. Submit job to get job_id. 2. Poll status with sequence_search_check_status. 3. Fetch results with sequence_search_get_results after success.

/api/ls/v2/sequence/search/submit

sequence_search_get_results

Use this tool after sequence_search_check_status reports success for a job created by sequence_search_submit or modification_search_submit.

/api/ls/v2/sequence/search/results

sequence_search_check_status

Use this tool after sequence_search_submit or modification_search_submit to check the current backend status of a submitted job.

/api/ls/v2/sequence/search/status

sequence_fetch

Batch fetch full detail records by sequence number. Maximum 100 sequence numbers per request.

/api/ls/v2/sequence/fetch

sequence_alignment

Run sequence alignment. Use this tool when the user wants to align biological sequences directly. Supports PSA (pairwise) and MSA (multiple sequence alignment). query_sequence is required for PSA.

/api/ls/v2/sequence/alignment

modification_search_submit

Use this tool when the user wants to search bio sequence records by modification conditions and optionally narrow the result set with sequence length or a query sequence. Tool flow: 1. Submit job to get job_id. 2. Poll status with sequence_search_check_status. 3. Fetch results with sequence_search_get_results after success.

/api/ls/v2/modification/search/submit

antibody_antigen_search

Use this tool when the user wants to find antibodies associated with a target antigen and optionally narrow the result set with facet filters.

/api/ls/v2/antibody-antigen/search

What is Biologics & Sequence MCP Server?

Intelligent platform for biological sequences and macromolecules, covering antibody-antigen interaction discovery, full-lifecycle sequence search, sequence fetching and alignment, and modification status analysis.

Capabilities

  • Use this tool when the user wants to launch a bio sequence search job. Tool flow: 1. Submit job to get job_id. 2. Poll status with sequence_search_check_status. 3. Fetch results with sequence_search_get_results after success.
  • Use this tool after sequence_search_check_status reports success for a job created by sequence_search_submit or modification_search_submit.
  • Use this tool after sequence_search_submit or modification_search_submit to check the current backend status of a submitted job.
  • Batch fetch full detail records by sequence number. Maximum 100 sequence numbers per request.
  • Run sequence alignment. Use this tool when the user wants to align biological sequences directly. Supports PSA (pairwise) and MSA (multiple sequence alignment). query_sequence is required for PSA.
  • Use this tool when the user wants to search bio sequence records by modification conditions and optionally narrow the result set with sequence length or a query sequence. Tool flow: 1. Submit job to get job_id. 2. Poll status with sequence_search_check_status. 3. Fetch results with sequence_search_get_results after success.
  • Use this tool when the user wants to find antibodies associated with a target antigen and optionally narrow the result set with facet filters.

How to connect

Get a PatSnap Open Platform API key, copy the MCP connection URL from the Connect panel on this page, and add the server to Cursor, Claude Desktop, or another Model Context Protocol-compatible AI agent client.

Example MCP configuration

{
  "mcpServers": {
    "biologics_sequence": {
      "url": "https://connect.patsnap.com/mcp/biologics-sequence?apikey={your_api_key}"
    }
  }
}

Use cases

  • Use Biologics & Sequence MCP Server to let AI agents access PatSnap innovation intelligence inside agent conversations.

FAQ

What is Biologics & Sequence MCP Server?
Biologics & Sequence MCP Server is a PatSnap Open Platform Model Context Protocol server that exposes innovation intelligence tools for AI agents and LLM clients.
How does Biologics & Sequence MCP Server work with AI agents?
An MCP-compatible client connects to the server URL with your PatSnap Open Platform API key, discovers available tools, and lets the model call PatSnap data and capabilities during conversations.
What tasks can Biologics & Sequence MCP Server perform?
Biologics & Sequence MCP Server exposes PatSnap tools through the Model Context Protocol so AI agents can retrieve patents, papers, and innovation intelligence during multi-step reasoning.
How do I connect this MCP server to an agent?
Get a PatSnap Open Platform API key, copy the MCP connection URL or JSON config from this page, and add it to your MCP-compatible client following the MCP Quick Start guide.